Custom Production services
Peptide Design & Labeling
1. What are the criteria for peptide antigen design?
Our criteria for peptide design are:
a) Hydrophilicity; to ensure the antigen is exposed on the surface of the protein.
b) Antigenicity; the ability of the peptide to be recognized by and interact with
an antibody.
c) N- or C-terminal peptide; the termini are exposed in most proteins.
d) Contains MHC Class II preferred residues; such as D, Y, P, and F.
e) No homology with other proteins when searched for using BLAST.
f) Cytoplasmic domains are preferable for transmembrane proteins as they are more
immunogenic.
g) Glycosylation and phosphorylation sites are avoided if possible.
h) No cysteine residue in the middle of the peptide; Cys is used to conjugate keyhole
limpet hemocyanin (KLH).
2. Does Proteintech offer peptide labeling (e.g. fluorescein)?
Yes, we can label the peptide during peptide synthesis but we do not offer a standalone
peptide labeling service. We offer two options for peptide labeling:
a) Lysine-fluorescein labeling: The most efficient labeling is achieved by adding
a pre-labeled lysine residue at one terminus of the peptide, either N-terminus or
C-terminus. Alternatively, a pre-existing terminus lysine residue may be labeled
with fluorescein. The end product is about 90% pure before HPLC purification, so
HPLC purification becomes optional. b) N-terminal-fluorescein labeling: The second
method occurs at the last step of peptide synthesis. A fluorescein label is added
to the free NH2 group in the N-terminus. The efficiency of this reaction is much
lower than with lysine-fluorescein labeling so please keep in mind that the end
yield may be low.
3. Can I include special amino acids like hydroxyproline in my peptide?
Yes, but there will be a surcharge of $200* for that particular amino acid. In addition,
please let us know whether you need an L or D configuration on the residue.
4. What carrier proteins do you use and does the choice affect the
price?
In most cases we use KLH as a carrier protein but you can also specify the use of
BSA, ovalbumin, GST or MAP if necessary. The price will be the same in each case.
5. How is the carrier linked to the peptide?
The peptide is linked via a terminal cysteine (added by us) on the carrier protein.
6. How long does it take from peptide design to the purification
of the antibody?
The total length of time is approximately 4 months.
7. Is there a minimum length of peptide required for immunization?
The minimum peptide length required for a good immune response is 13 amino acids.
1. What is the maximum length of peptide you have synthesized? We synthesize 40-60
amino acid long peptides regularly. Our record length is 83 amino acids long. It
all depends on the particular sequence required and a judgment can be made once
we have seen the sequence.
8. How many rabbits are immunized for each peptide service?
Each antigen will be injected into two rabbits.
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Custom Antibody Production Services:
1. How should I choose between monoclonal and polyclonal antibodies?
a) Polyclonal antibodies are cheaper than monoclonal antibodies because they are
much simpler to produce.
b) Polyclonal antibodies, which comprise a mixture of antibodies recognizing multiple
epitopes, are more tolerant of minor changes in the antigen; but there is a higher
chance of cross-reacting with other substances with a similar structure. In contrast,
monoclonal antibodies are highly specific for one particular epitope on the substance
of interest. Since monoclonal antibodies are so specific, they might not recognize
the substance if it undergoes chemical changes or degradation.
2. Should I choose the long or short method for custom polyclonal
antibody production?
The standard long protocol is our preferred method of production as it provides
a better success rate than the short protocol. The short protocol is designed for
customers who need the antibody quickly and are willing to trade success rate for
delivery time.
3. I do not have any antigen; can Proteintech synthesize a peptide
antigen or clone and express a full-length protein antigen?
Yes, we are happy to provide a comprehensive antigen production service.
4. Should I choose a full-length fusion protein or peptide antigen?
In our experience, full-length fusion protein antigens usually generate antibodies
with both higher titer and higher specificity. We recommend the full-length fusion
protein procedure if your protein of interest has low sequence similarity with other
proteins. However, if you need an antibody that is specific to a certain protein
whose sequence is highly similar to other proteins we strongly recommend using a
peptide antigen. Other reasons you might choose a peptide antigen include: 1) Not
having the cDNA for the protein of interest; 2) Expression of the full-length fusion
protein has not been successful for some reason; 3) It has a comparatively low cost.
5. Is your custom antibody production service limited to human genes?
No, we do custom production of antibodies for proteins from any species.
6. How much antigen does Proteintech need for immunization?
For full-length protein antigen, the optimum amount needed is 1mg protein for each
rabbit (2mg for two rabbits for each order). The minimum amount required is 300
μg/per rabbit. For peptide antigen, a minimum of 5mg of peptide conjugated to 2.5mg
of KLH/per rabbit will be needed for immunization (In Proteintech's peptide antibody
protocol, we use 10mg of peptide conjugated to 5mg of KLH).
7. What buffer should I use when sending the antigen to Proteintech?
The antigen can be stored in any biological buffer without detergent or urea. It
can be sent frozen or at 4 °C at your discretion.
8. Can I send you antigen in gel slices cut from a SDS-PAGE gel?
Yes, protein in gel slices can also be used as antigen, although soluble or precipitated
antigen is preferable.
9. My antigen aggregates in inclusion bodies or has to be denatured
to prevent autocatalysis. Is it possible to perform immunization with antigen denatured
in 8M urea?
Yes, it is possible. Proteintech have lots of experience of using antigens denatured
in 8M urea.
10. How much plasmid is required for recombinant protein expression
and purification?
10-20μg of plasmid is sufficient.
11. What kind of vectors should I provide for protein production
or other related services?
We accept vectors that express GST or His tags. Please tell us the tag type, resistance
of the vector, predicted molecular weight of the fusion protein and other related
information when placing your order.
12. Can precipitated protein be used as antigen?
Yes. In many cases we have observed that precipitated protein yields more effective
antibody than soluble antigen. It is thought that precipitated antigen provides
a long- term antigen depot for continuing stimulation of the immune system and it
may also be easier for antigen-presenting cells to engulf.
13. How much antiserum will I receive?
Each rabbit will yield approximately 12ml of serum in each production bleed and
45-50ml of serum from 90-100ml blood in the final bleed, totaling about 150ml of
antiserum from two rabbits.
14. How does Proteintech determine which rabbit to purify serum
from?
We decide that based on the ELISA results with the test bleeds. If both rabbits
give good results, we will purify 15ml of serum from each rabbit. If one rabbit
gives better results than the other, we will purify 30ml of serum from this rabbit.
15. How much purified antibody can I get from antiserum?
That depends on the concentration of the specific antibody in the serum provided.
Usually we can get 2-10ml of purified antibody from 15ml of antiserum.
16. Do you offer multiple peptide immunization (immunize the rabbits
with two peptides from the same protein)?
We can perform multiple peptide immunization. Please keep in mind that in some cases
one peptide will be favored over the other for antibody generation.
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Pre-made Products
Primary Antibodies
1. How long will my antibody last if it is properly stored?
Our antibodies will remain functional for a minimum 5 years when properly stored.
2. How should I store my antibodies? Do I need to store it in aliquots?
Please store the antibody in the original tube at -20°C and do not aliquot. Our
antibodies are stored in 50% glycerol which prevents them from freezing.
3. Could you send me detailed information for this antibody?
You can find the detailed information for each antibody on their product datasheet.
Please search and click the antibody of your interest; you will be directed to the
datasheet for your antibody which includes validated applications, images, etc.
If you would like to print the datasheet, simply click the PDF or print icon beside
the Catalog Number.
4. What is the concentration of my antibody?
The concentration of a given antibody can be found on the datasheet.
5. Can you provide me with the immunogen sequence of this antibody?
On the datasheet webpage of your antibody of interest, please click the link beside
‘Immunogen’ to view a description of the immunogen. Should you require more detailed
information please speak to a member of staff on
LIVE CHAT.
6. Is there a blocking peptide available for my antibody?
We use full-length recombinant proteins as immunogens to generate our antibodies.
However, we do not test the neutralizing effect of the antigen (the recombinant
protein) and do not have any other blocking peptides against our antibodies.
7. Has my antibody been tested on any species other than human?
We usually test antibodies on human and mouse cells or tissues. If you cannot find
information associated with mouse cells or tissues or to find information on other
species, please
contact us.
8. Does my antibody cross-react with other species?
This is hard to predict with accuracy but will depend upon the extent of protein
sequence similarity between the immunogen and the potential cross-reactive protein
sequence. A pair-wise sequence alignment can be performed online through NCBI-BLAST
website (Link to http://blast.ncbi.nlm.nih.gov/Blast.cgi).
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Secondary antibodies
1. How do I choose a secondary antibody?
When choosing a secondary antibody product, the following points should be considered:
a. Which animal was used to generate your primary antibody? For instance, if your
primary antibody is raised in a rabbit, you need to choose an anti-rabbit secondary
antibody; if it is raised in a mouse, you need to choose an anti-mouse secondary
antibody.
b. What class (or subclass) is your primary antibody? The secondary antibody should
match the class/subclass of the primary antibody. This is most important for monoclonal
antibodies because different classes (or subclasses) can be found. Since polyclonal
antibodies, such as those raised in rabbit, are usually of the IgG class, anti-IgG
secondary antibodies are commonly used.
c. What application do you want to perform? Enzyme-linked secondary antibodies such
as those linked to peroxidase or alkaline phosphatase, are commonly used for ELISAs,
Immunoblotting and Immunohistochemistry applications. For Immunofluorescence and
Flow Cytometry, which rely on fluorescence, a fluorochrome-conjugated secondary
antibody is needed.
d. Is an adsorbed secondary antibody recommended? In order to reduce non-specific
background, secondary antibodies which have been adsorbed to serum of the host species
are the first choice. For instance, if working with human tissues, cells or proteins
choose a secondary antibody that has been adsorbed with human serum or human IgG.
e. Is a F(ab’)2 fragment product necessary? When working with some immune cells
or tissues that have Fc receptors (B cells, leukocytes, thymus, spleen, blood, etc.),
it is necessary to choose a F(ab’)2 fragment to eliminate non-specific binding through
Fc receptors. Alternatively, you may perform an absorption step to block Fc receptors,
using purified IgG from the host species of your secondary antibody.
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Recombinant proteins
1. What method does Proteintech use for recombinant protein purification?
We usually add 6x His tags or GST tags to the N-terminus of proteins and these proteins
are then purified by Ni2+ and glutathione affinity chromatography respectively.
2. What storage buffers are used for your recombinant protein?
The His-tagged recombinant protein is usually stored in 1x PBS buffer (58mM Na2HPO4,
17mM NaH2PO4, 68mM NaCl, pH 7.4) containing 300mM imidazole and 10% glycerol. The
GST-tagged recombinant protein is usually stored in 1x PBST buffer (58mM Na2HPO4,
17mM NaH2PO4, 68mM NaCl, 1% Triton-X100, pH 7.4) containing 100mM glutathione (GSH)
and 10% glycerol.
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Applications
Antibody applications
Proteintech aim to make an “all-purpose” antibody which will work in most applications,
all our antibodies are covered by our Satisfaction Guarantee. You can read more
about that
here. Alternatively read below to find out about individual applications
or talk to a member of staff on
Live Chat. You can also consult our Applications Guide.
1. I need an antibody suitable for matched-pair ELISA rather than
indirect ELISA; can you test a specific antibody for this?
We would be pleased to investigate this for you. Please
contact
us for more detailed information.
2. I have purchased an antibody that will be used for IF and/or
IHC. Do you offer a negative tissue control for this antibody?
Yes, we can offer you a negative tissue control. Please
contact
us for price information.
3. Are your antibodies suitable for immunohistochemistry on frozen
sections?
Our antibodies have only been tested on paraffinized tissue sections; we do not
test their performance on frozen sections.
4. I find that the observed molecular weight of my protein in a
western blot is different from the predicted molecular weight. Why might this be
the case?
Please keep in mind that the predicted molecular weight is calculated from the protein
sequence. There are several possibilities which may explain this observation:
a) Degradation of the lysate: The sample may have been degraded by proteolysis;
explaining why it will show a band with a different molecular weight than the one
predicted from the sequence.
b) Protein modification: Some proteins, such as membrane proteins, are commonly
modified (e.g. glycosylation) after translation. This may result in the protein
having a different molecular weight to that predicted from the primary protein sequence.
5. I find that there are additional bands in the western blot result
other than the major band. What might these bands be?
There are many factors that are responsible for additional bands appearing in western
blot results:
a) Mechanical degradation of the lysate: If samples are stored for a prolonged period
or if proteins or membranes are fractionated after homogenization of the starting
tissue, additional bands which are faster migrating than the targeted one may appear.
To get around this use fresh lysate.
b) Proteolytic degradation of the lysate: Proteolysis is a common cause of the appearance
of background bands. Make sure there are sufficient protease inhibitors in the sample.
c) Too much protein sample was loaded
d) The detection system used was too sensitive
e) The western blot membrane was not blocked correctly.
f) Homologous proteins or other isoforms of the target protein: Around one third
of proteins belong to protein families, containing homologous proteins which may
cross-react with antibodies. Furthermore, one single gene can be translated into
isoforms with different molecular weights. Antibodies usually can detect more than
one of them.
g) Unspecificity of the antibody: Although Proteintech applies the most stringent
quality assurance standards to ensure that our antibodies do not bind multiple targets;
it is possible that the antibody binds some unrelated proteins, especially on those
lysates which we did not test.
6. I cannot detect my antigen after western blotting?
The concentration of antigen may be too low. If the relative concentration of the
antigen of interest is too low (less than 0.2 % of total protein), it may be difficult
to detect. If this happens please load more sample, or enrich the antigen by fractionation
or by immunoprecipitation.
7. What type of membrane do you suggest for Western blotting, i.e.
polyvinylidene fluoride (PVDF) or nitrocellulose?
We usually suggest customers using PVDF membranes rather than nitrocellulose membranes,
because PVDF membranes offer better protein retention, physical strength and broad
chemical compatibility. The typical binding capacity of commercially available PVDF
membranes is 100-200 μg/cm2, compared to that of nitrocelllulose membranes having
a binding capacity of 80-100 μg/cm2. However, if the detection requires that the
transferred protein retains its native conformation after transfer, for instance,
when the antibody recognizes 3-D structure (e.g. an antigenic epitope consisting
of non-contiguous residues), nitrocellulose membranes might be preferred.
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